python-stuff:
sudo aptitude install cython python-numpy python-scipy \
python-setuptools python-numeric python-matplotlib python-wxgtk2.8 \
python-decorator python-mysqldb python-nose python-dev python-h5py
java:
sudo aptitude install openjdk-6-jdk openjdk-6-jre
export JAVA_HOME=’/usr/lib/jvm/java-6-openjdk’
export LD_LIBRARY_PATH=’/usr/lib/jvm/java-6-openjdk/jre/lib/amd64/server’
Cell Profiler:
git clone https://github.com/CellProfiler/CellProfiler.git
cd CellProfiler/
run it:
python ./CellProfiler.py