installing CP2 on ubuntu 10.10

27 Mar

python-stuff:

sudo aptitude install cython python-numpy python-scipy \
    python-setuptools python-numeric python-matplotlib python-wxgtk2.8 \
    python-decorator python-mysqldb python-nose python-dev python-h5py

java:

sudo aptitude install  openjdk-6-jdk openjdk-6-jre 
export JAVA_HOME='/usr/lib/jvm/java-6-openjdk'
export LD_LIBRARY_PATH='/usr/lib/jvm/java-6-openjdk/jre/lib/amd64/server'

Cell Profiler:

git clone https://github.com/CellProfiler/CellProfiler.git
cd CellProfiler/

run it:

python ./CellProfiler.py

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